Fix checkout.py issues when p.patchlevel > 1.
When p.patchlevel > 1, p.filename does not correspond to the files that git-apply would modify. See bug for details Bug: 764294 Change-Id: Icdb803056e306edb25238b2d9cdabd3ff175d8ed Reviewed-on: https://chromium-review.googlesource.com/663357Reviewed-by: Aaron Gable <agable@chromium.org> Commit-Queue: Edward Lesmes <ehmaldonado@chromium.org>
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